HuBMAP-wide data products contain consolidated data for all datasets of a particular assay type and tissue, across all datasets, assay variants, and data providers. RNA-seq data products are added as both raw and processed versions: 'raw' features gene expression count matrices from the HuBMAP RNA-seq pipeline, and 'processed' versions are the results of secondary analysis (normalization, filtering, dimensionality reduction, clustering) applied to the raw matrix.
| Tissue Type | Creation Time | Assay Type | Number of Datasets | Total Raw Cells | Number Raw Cell Types | Total Processed Cells | Number Processed Cell Types | Raw Data Product Download | Processed Data Product Download | Shiny App | (All Versions) |
|---|---|---|---|---|---|---|---|---|---|---|---|
Heart |
April 21, 2025, 1:26 p.m. | rna-seq | 15 | 675772 | 21 | 22094 | 19 | Raw H5AD | Processed H5AD | Shiny App | All versions of Heart |
|
Heart |
Oct. 17, 2024, 3:09 p.m. | rna-seq | 24 | 1007679 | 21 | 39181 | 19 | Raw H5AD | Processed H5AD | Shiny App | All versions of Heart |
|
Heart |
July 22, 2024, 7:36 p.m. | rna-seq | 24 | 1007679 | 21 | 39181 | 19 | Raw H5AD | Processed H5AD | Shiny App | All versions of Heart |