HuBMAP-wide data products contain consolidated data for all datasets of a particular assay type and tissue, across all datasets, assay variants, and data providers. RNA-seq data products are added as both raw and processed versions: 'raw' features gene expression count matrices from the HuBMAP RNA-seq pipeline, and 'processed' versions are the results of secondary analysis (normalization, filtering, dimensionality reduction, clustering) applied to the raw matrix.
| Tissue Type | Creation Time | Assay Type | Number of Datasets | Total Raw Cells | Number Raw Cell Types | Total Processed Cells | Number Processed Cell Types | Raw Data Product Download | Processed Data Product Download | Shiny App | (All Versions) |
|---|---|---|---|---|---|---|---|---|---|---|---|
Spleen |
July 1, 2025, 7:02 p.m. | CODEX | 50 | 3288348 | NA | 0 | NA | Raw H5AD | NA | All versions of Spleen | |
|
Spleen |
May 19, 2025, 1:38 p.m. | rna-seq | 16 | 108929 | NA | 78030 | NA | Raw H5AD | Processed H5AD | Shiny App | All versions of Spleen |
|
Spleen |
Nov. 7, 2024, 3:06 p.m. | codex | 65 | 3939679 | NA | 0 | NA | Raw H5AD | NA | All versions of Spleen |